Update to the issue. Okay had the batteries on the charger to charge back up this week. They tested good, which I am not suprised considering they are only about 10 days old.
Cleaned the holy hell out of my battery clamps, terminals, alternator connector ring. Brushed them all up nice and shiny, double checked all of my connections around the battery terminals and cables.
Disconnected the alternator wire from the battery terminal and metered the voltage with the truck running. Showed ~9 volts at the battery terminal ring and matching voltage at the back of the alternator. Tells me the fuses are good and the alternator is not putting out enough voltage again.
Took it back to Advance Auto parts and it tested bad on their testing station also. So they swapped out that 2 week old alternator for another one, tested good before I left the store.
Put the now third replacement alternator in my truck. I left the wire from the alternator to the battery disconnected at the battery so I could meter the voltage on this alternator. Started up the truck and at first it didn't show any voltage, then it went to around 9 volts again.
When I am doing my metering, I am not going to the negative terminal of the battery, but am actually going to steel in my engine compartment to make sure there isn't a grounding issue from my battery terminals.
What can I meter or check to see if I am having some module problem or a voltage reference problem? What else can I possibly try to get this issue fixed?